Run OmicsBraid from externally estimated summary statistics

Usage

run_omics_braid_summary(
  effects,
  covariance = NULL,
  omic_order,
  orientation = NULL,
  equivalence_margin = 0.3,
  alpha = 0.05,
  state_basis = c("local", "adjusted"),
  equivalence_p_adjust = "BH",
  trajectory_margin = 0.15,
  trend_p_adjust = "BH",
  min_slope = NULL,
  pattern_draws = 2000L,
  seed = 1L
)

Arguments

effects: Data frame with at least `entity`, `omic`, `effect`, and `se`.
covariance: Optional named list of entity-specific covariance matrices.
omic_order: Ordered omics.
orientation: Optional named +1/-1 vector to harmonize omic effect directions.
equivalence_margin: Smallest effect size of interest.
alpha: Significance level.
state_basis: Use local or multiplicity-adjusted inferential states for deterministic braid labels.
equivalence_p_adjust: Multiple-testing method retained for adjusted equivalence/difference evidence.
trajectory_margin: Smallest meaningful standardized-effect change per one-layer transition.
trend_p_adjust: Multiple-testing method retained for adjusted trajectory evidence.
min_slope: Deprecated alias for `trajectory_margin`.
pattern_draws: Monte Carlo draws.
seed: Random seed.

Value

`omics_braid_result` without sample-level data.